| Title/Authors | Title | Research Artifacts
[?] A research
artifact is any by-product of a research project that is not
directly included in the published research paper. In Computer
Science research this is often source code and data sets, but
it could also be media, documentation, inputs to proof
assistants, shell-scripts to run experiments, etc.
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Determining the Consistency of Resolved Triplets and Fan Triplets Jesper Jansson, Andrzej Lingas, Ramesh Rajaby, Wing-Kin Sung |
Determining the Consistency of Resolved Triplets and Fan Triplets Details |
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Superbubbles, Ultrabubbles and Cacti Benedict Paten, Adam M. Novak, Erik Garrison, Glenn Hickey |
Superbubbles, Ultrabubbles and Cacti Details |
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A Flow Procedure for the Linearization of Genome Sequence Graphs David Haussler, Maciej Smuga-Otto, Benedict Paten, Adam M. Novak, Sergei Nikitin, Maria Zueva, Dmitrii Miagkov |
A Flow Procedure for the Linearization of Genome Sequence Graphs Details |
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Xiaoqian Wang, Jingwen Yan, Xiaohui Yao, Sungeun Kim, Kwangsik Nho, Shannon L. Risacher, Andrew J. Saykin, Li Shen, Heng Huang |
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Research produced artifacts
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A Concurrent Subtractive Assembly Approach for Identification of Disease Associated Sub-metagenomes Wontack Han, Mingjie Wang, Yuzhen Ye |
A Concurrent Subtractive Assembly Approach for Identification of Disease Associated Sub-metagenomes Details |
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Boosting Alignment Accuracy by Adaptive Local Realignment Dan F. DeBlasio, John D. Kececioglu |
Boosting Alignment Accuracy by Adaptive Local Realignment Details |
Author Comments:
This software needs a secondary structure prediction tool such as PSIPRED, the run scripts are provided in the download package on the tools website. The data used in all publications is available via links on the website as well.
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aBayesQR: A Bayesian Method for Reconstruction of Viral Populations Characterized by Low Diversity Soyeon Ahn, Haris Vikalo |
aBayesQR: A Bayesian Method for Reconstruction of Viral Populations Characterized by Low Diversity Details |
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Chen Sun, Robert S. Harris, Rayan Chikhi, Paul Medvedev |
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Dynamic Alignment-Free and Reference-Free Read Compression Guillaume Holley, Roland Wittler, Jens Stoye, Faraz Hach |
Dynamic Alignment-Free and Reference-Free Read Compression Details |
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Improved Search of Large Transcriptomic Sequencing Databases Using Split Sequence Bloom Trees Brad Solomon, Carl Kingsford |
Improved Search of Large Transcriptomic Sequencing Databases Using Split Sequence Bloom Trees Details |
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Resolving Multicopy Duplications de novo Using Polyploid Phasing Mark Chaisson, Sudipto Mukherjee, Sreeram Kannan, Evan E. Eichler |
Resolving Multicopy Duplications de novo Using Polyploid Phasing Details |
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Improving Imputation Accuracy by Inferring Causal Variants in Genetic Studies Yue Wu, Farhad Hormozdiari, Jong Wha J. Joo, Eleazar Eskin |
Improving Imputation Accuracy by Inferring Causal Variants in Genetic Studies Details |
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A Bayesian Active Learning Experimental Design for Inferring Signaling Networks Robert Osazuwa Ness, Karen Sachs, Parag Mallick, Olga Vitek |
A Bayesian Active Learning Experimental Design for Inferring Signaling Networks Details |
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Adegoke Ojewole, Jonathan D. Jou, Vance G. Fowler, Bruce Randall Donald |
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Towards Recovering Allele-Specific Cancer Genome Graphs Ashok Rajaraman, Jian Ma |
Towards Recovering Allele-Specific Cancer Genome Graphs Details |
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Simone Zaccaria, Mohammed El-Kebir, Gunnar W. Klau, Benjamin J. Raphael |
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Regev Schweiger, Eyal Fisher, Elior Rahmani, Liat Shenhav, Saharon Rosset, Eran Halperin |
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Christopher Pockrandt, Marcel Ehrhardt, Knut Reinert |
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Elior Rahmani, Regev Schweiger, Liat Shenhav, Eleazar Eskin, Eran Halperin |
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Quantifying the Impact of Non-coding Variants on Transcription Factor-DNA Binding Jingkang Zhao, Dongshunyi Li, Jungkyun Seo, Andrew S. Allen, Raluca Gordân |
Quantifying the Impact of Non-coding Variants on Transcription Factor-DNA Binding Details |
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A Fast Approximate Algorithm for Mapping Long Reads to Large Reference Databases Chirag Jain, Alexander T. Dilthey, Sergey Koren, Srinivas Aluru, Adam M. Phillippy |
A Fast Approximate Algorithm for Mapping Long Reads to Large Reference Databases Details |
Author Comments:
Software is hosted on Github for public use. Datasets used in the publication are also publicly available, with links cited within text.
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Uri Keich, William Stafford Noble |
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